Thoughts and guesses about research in Myalgic encephalomyelitis/(Chronic Fatigue Syndrome)
lørdag den 18. februar 2023
Neurovaskulær dysregulering påvist hos ME patienter
mandag den 2. maj 2022
Efter motion har ME patienter forhøjet niveau af pyrroline-5-carboxylate
Metaboliske ændringer hos ME patienter før og efter to dages motion
- D1PRE: FC = 1,18, p = 0,10
- D1POST: FC = 1,36, p = 0,009
- D2PRE: FC = 1,20, p = 0,13
- D2POST: FC = 1,72, p = 0,0000122
Figure 1. The metabolic pathways of P5C—physiological intracellular intermediate of the interconversion of proline, ornithine, and glutamate. Acetyl-CoA—acetyl coenzyme A, ATP—adenosine triphosphate, α-KG—α-ketoglutarate, Glu—glutamate, GSAL—L-glutamate-γ-semialdehyde, METC—mitochondrial electron transport chain, NAD+—oxidized form of nicotinamide adenine dinucleotide, NADH—reduced form of nicotinamide adenine dinucleotide, NADP+ –oxidized form of nicotinamide adenine dinucleotide phosphate, NADPH—reduced form of nicotinamide adenine dinucleotide phosphate, ORN—ornithine, P5C—∆ 1 -pyrroline-5-carboxylate, P5CDH—P5C dehydrogenase, P5CS—P5C synthase, PAT1—proton-coupled amino acid transporter 1, PRODH/POX—proline dehydrogenase/oxidase, PROT—L-proline transporter PROT, PYCR1/2/L—P5C reductase 1/2/L, ROS—reactive oxygen species, SIT1—sodium/imino-acid transporter 1, SNAT1/2—sodium-coupled neutral amino acid transporter 1/2, TCA cycle—tricarboxylic acid cycle, δOAT—ornithine δ-aminotransferase. Reference: Chalecka M, Kazberuk A, Palka J, Surazynski A. P5C as an Interface of Proline Interconvertible Amino Acids and Its Role in Regulation of Cell Survival and Apoptosis. Int J Mol Sci. 2021 Oct 29;22(21):11763. doi: 10.3390/ijms222111763. PMID: 34769188; PMCID: PMC8584052. https://www.mdpi.com/1422-0067/22/21/11763
- D1PRE: FC = 1,03, p = 0,76
- D1POST: FC = 1,04, p = 0,88
- D2PRE: FC = 1,15, p = 0,13
- D2POST: FC = 1,18, p = 0,03
Læs også:
Lav arteriel-venøs iltindhold difference hos ME patienter
Proline synthesis through PYCR1 is required to support cancer cell proliferation and survival in oxygen-limiting conditions
Perspectives, past, present and future: the proline cycle/proline-collagen regulatory axis
lørdag den 30. april 2022
ME patienter har lavt niveau af tridecenedioate
...fortsættelse. Læs først:
Metaboliske ændringer hos ME patienter før og efter to dages motion
- p = 0,0000244
- q = 0,000685
- FC = 0,540
- p = 0,000000516
- q = 0,000580
- FC = 0,453
Integrating multi-omics with neuroimaging and behavior: A preliminary model of dysfunction in football athletes, Neuroimage: Reports,Volume 1, Issue 3,2021,100032,ISSN 2666-9560, https://doi.org/10.1016/j.ynirp.2021.100032. (https://www.sciencedirect.com/science/article/pii/S2666956021000301)
Hvad betyder det lave niveau af tridecenedioate for ME patienter?
Læs også:
A metabolomic measure of energy metabolism moderates how an inflammatory miRNA relates to rs-fMRI network and motor control in football athletes
Referencer
1)Germain A, Giloteaux L, Moore GE, Levine SM, Chia JK, Keller BA, Stevens J, Franconi CJ, Mao X, Shungu DC, Grimson A, Hanson MR. Plasma metabolomics reveals disrupted response and recovery following maximal exercise in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome. JCI Insight. 2022 Mar 31:e157621. doi: 10.1172/jci.insight.157621. Epub ahead of print. PMID: 35358096.
https://pubmed.ncbi.nlm.nih.gov/35358096/
https://insight.jci.org/articles/view/157621
2) Sumra Bari, Nicole L. Vike, Khrystyna Stetsiv, Alexa Walter, Sharlene Newman, Keisuke Kawata, Jeffrey J. Bazarian, Linda Papa, Eric A. Nauman, Thomas M. Talavage, Semyon Slobounov, Hans C. Breiter, Integrating multi-omics with neuroimaging and behavior: A preliminary model of dysfunction in football athletes, Neuroimage: Reports, Volume 1, Issue 3,2021,100032,ISSN 2666-9560, https://doi.org/10.1016/j.ynirp.2021.100032.
https://www.sciencedirect.com/science/article/pii/S2666956021000301
fredag den 29. april 2022
Metaboliske ændringer hos ME patienter før og efter to dages motion
Der er blevet udført et studie, hvor ME patienter og kontrolpersoner motionerede to dage i træk. Der blev udtaget blodprøver lige før og lige efter motion begge dage. De fire tidspunkter blev benævnt
- D1PRE
- D1POST
- D2PRE
- D2POST
Blodprøverne blev undersøgt for indhold af metabolitter (metabolomics).
Mængden af en metabolit hos ME patienter i forhold til kontrolpersoner er angivet som FoldChange (FC):
- FC mellem 0,9 og 1,1 - niveauet anses for uændret
- FC over 1,1 - niveauet af metabolitten er højere hos ME patienter
- FC under 0,9 - niveauet af metabolitten er lavere hos ME patienter
FC er signifikant ændret, når p-værdien er under 0,05. Der kan dog forekomme falsk positive værdier, der er derfor udført en Wilcoxon ranksum test. Denne angives ved en q-værdi, som skal være under 0,05. Denne grænse er meget konservativt sat og kan udelukke data, som er værd at kigge nærmere på. Derfor er q-værdier under 0,15 også angivet i artiklen.
Den første blodprøve før motion på dag 1 (D1PRE) viste, at kvinder med ME havde 7 metabolitter, der var signifikant forskellige fra kontrolpersoner. Se figur 4 i artiklen https://insight.jci.org/articles/view/157621/pdf
Efter 2 dage med motion (D2POST) var 56 metabolitter hos kvinder med ME ændrede. Se figur 3 i artiklen https://insight.jci.org/articles/view/157621/pdf
Mange biokemiske stiveje var påvirkede hos kvinder med ME. Se figur 2 i det supplerende materiale https://insight.jci.org/articles/view/157621/sd/5
Det her studie er meget værdifuldt, og jeg er sikker på, at vi kommer til at høre meget mere om det.
Reference
Germain A, Giloteaux L, Moore GE, Levine SM, Chia JK, Keller BA, Stevens J, Franconi CJ, Mao X, Shungu DC, Grimson A, Hanson MR. Plasma metabolomics reveals disrupted response and recovery following maximal exercise in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome. JCI Insight. 2022 Mar 31:e157621. doi: 10.1172/jci.insight.157621. Epub ahead of print. PMID: 35358096.
https://pubmed.ncbi.nlm.nih.gov/35358096/
https://insight.jci.org/articles/view/157621
mandag den 1. november 2021
Lav arteriel-venøs iltindhold difference hos ME patienter
Hjertet pumper iltet blod fra lungerne rundt i kroppen. Det iltrige blod føres ud i kroppen gennem arterier og kaldes for arterielt blod. Det iltfattige blod føres tilbage til hjertet gennem vener, for igen af blive pumpet ud i lungerne til iltning. Det iltfattige blod i venerne kaldes venøst blod.
Forskellen i iltindhold mellem arterielt blod og venøst blod kaldes på engelsk:
"arterial-venous oxygen content difference".
Det er hæmoglobin, der bærer ilt og iltindhold differencen skal vurderes i forhold til hæmoglobin koncentrationen. Der for ser formlen for iltindhold difference således ud:
"(Ca-vO2) / koncentrationen af Hb".
Hvis den arteriel-venøse iltindhold difference er stor, så har kroppen optaget en masse ilt fra blodet. Og omvendt, hvis differencen er lav, betyder det, at det venøse blod vender tilbage til hjertet uden, at der er optaget så meget ilt.
Forskere fra Havard Medical School er eksperter i at måle iltindhold differencen under motion hos mennesker med motionsintolerance. Dette gøres ved en invasiv kardiopulmonær motionstest. Iltindhold differencen er under motionstest målt hos ME patienter:
Insights From Invasive Cardiopulmonary Exercise Testing of Patients With Myalgic Encephalomyelitis/Chronic Fatigue Syndrome
https://journal.chestnet.org/article/S0012-3692(21)00256-7/fulltext
Forskerne udvalgte data fra en patientgruppe, der både havde lavt fyldetryk i højre hjertekammer ("right arterial pressure" under 6,5 mm Hg) og som opfyldte ME diagnosekriterierne. Analyse af data viste, at ME patienterne under motion havde en lav arteriel-venøs iltindhold difference. Det betyder, at ME patienterne ikke optog/udnyttede ilten i blodet i tilstrækkelig grad. Dette medfører motionsintolerance. Forskerne udelukker dekonditionering som årsag til motionsintolerancen hos ME patienterne. I stedet peger de på mulige årsager, der kan bidrage til motionsintolerancen:
- Under motion bliver veneblodet ikke returneret til hjertet i tilstrækkeligt omfang, og der er herved ikke nok blod til et fyldetryk i hjertekammeret (engelsk: depressed cardiac output from impaired venous return - preload failure).
- Manglende ilt udnyttelse fordi blodet passerer fra arterier til vener uden at komme ud i de helt små blodkar (kapillærer), hvor en stor del af ilten udnyttes. Fænomenet kaldes arteriel-venøs shunting (AV-shunting). AV-shunting kan forekomme ved småfiber neuropati, som blev påvist hos en del ME patienter i artiklen.
Reference:
Joseph P, Arevalo C, Oliveira RKF, Faria-Urbina M, Felsenstein D, Oaklander AL, Systrom DM. Insights From Invasive Cardiopulmonary Exercise Testing of Patients With Myalgic Encephalomyelitis/Chronic Fatigue Syndrome. Chest. 2021 Aug;160(2):642-651. doi: 10.1016/j.chest.2021.01.082. Epub 2021 Feb 10. PMID: 33577778.
tirsdag den 1. september 2020
ZFR suppresses the antiviral response, but not in ME? Is macroH2A1/H2AFY involved?
ME peripheral blood mononuclear cell (PBMC) proteomes reveal decreased level of zinc finger RNA-binding protein (ZFR), foldchange = 0,52, p-value = 0,00047 (1).
ZFR suppresses interferon-beta induction and the antiviral response. ZFR controls interferon signaling by preventing aberrant splicing and nonsense-mediated decay (NMD) of histone variant macroH2A1/H2AFY mRNAs (2).
Serum from ME patients contains an activity which induces a powerful antiviral state, but it seems like the interferon response has been ruled out in the ME pathomechanism (3, 4).However, macroH2A1 has also been shown to bind and repress interferon-stimulated genes (ISG) promoters, raising the possibility that the constitutive ISG induction in ZFR-depleted cells could be partially due to loss of direct action of macroH2A1 on these genes. Taking the available data together, macroH2A1 appears to both suppress the initiation of type I interferon signaling by inhibiting IFNB1 transcription and by modulating the consequences of IFNB1 transcription by directly repressing ISG promoters (2).
The gene macroH2A1/H2AFY is differentially methylated in PBMC from ME patients. Read the blogpost:
H2AFY and ME
Is dysregulated macroH2A1/H2AFY involved in the ME pathomechanism?
MacroH2A1 can buffer transcriptional noise associated with the antiviral response
Knockdown of macroH2A causes a dramatic change in the antiviral gene expression program. Genes that normally do not respond to virus infection get activated or repressed (5).References
preprint 1) Eiren Sweetman, Torsten Kleffmann, Christina Edgar, Michel de Lange, Rosamund Vallings Howick Warren Tate: A SWATH-MS analysis of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome peripheral blood mononuclear cell proteomes reveals mitochondrial dysfunctionhttps://assets.researchsquare.com/files/rs-52172/v1/6b319d19-80fb-46e3-b56e-3687ae1c7203.pdf
https://www.nature.com/articles/s41467-018-03326-5
3) Schreiner P, Harrer T, Scheibenbogen C, et al. Human Herpesvirus-6 Reactivation, Mitochondrial Fragmentation, and the Coordination of Antiviral and Metabolic Phenotypes in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome. Immunohorizons. 2020;4(4):201-215. Published 2020 Apr 23. doi:10.4049/immunohorizons.2000006
https://pubmed.ncbi.nlm.nih.gov/32327453/
4) Corbitt M, Eaton-Fitch N, Staines D, Cabanas H, Marshall-Gradisnik S. A systematic review of cytokines in chronic fatigue syndrome/myalgic encephalomyelitis/systemic exertion intolerance disease (CFS/ME/SEID). BMC Neurol. 2019;19(1):207. Published 2019 Aug 24. doi:10.1186/s12883-019-1433-0
5) Lavigne MD, Vatsellas G, Polyzos A, et al. Composite macroH2A/NRF-1 Nucleosomes Suppress Noise and Generate Robustness in Gene Expression. Cell Rep. 2015;11(7):1090-1101. doi:10.1016/j.celrep.2015.04.022
fredag den 28. august 2020
Atrogin 1 mRNA is elevated in muscle biopsies of ME patients
Quote reference 1):
"Levels of Atrogin 1 mRNA were significantly elevated in muscle biopsies of patients with ME/CFS compared with HCs (Healthy Controls) suggesting an increase in protein degradation processes in muscles of patients with ME/CFS compared with HCs. Atrogin-1 binds to polyubiquitinated proteins to direct them for subsequent degradation by the 26S proteasome and as such is an important regulator of ubiquitin-mediated protein degradation in skeletal muscle (69). Increased levels of Atrogin-1 mRNA are associated with reduced muscle mass (69) and in this study Atrogin-1 was associated with a significant reduction in muscle fibre size, although a detailed examination of muscle protein degradation was not undertaken."
Atrogin 1, also known as muscle atrophy F-box (MAFbx), is encoded by FBXO32. Atrogin 1 degrades various muscle proteins, such as titin, nebulin, troponin, myosin-binding protein C, myosin light chains 1 and 2 and myosin heavy chains (2).
Read the blogpost:
Increased plasma N,N,N-trimethyl-L-alanyl-L-proline betaine in ME patients
http://followmeindenmark.blogspot.com/2020/02/
References:
preprint: 1) Arief Gusnanto, Kate Elizabeth Earl, George K Sakellariou, Daniel J Owens, Adam Lightfoot, Sandra A Fawcett, Euan Owen, Caroline A Staunton, Tu Shu, Fiona C Croden, Manuel Fenech, Melanie A Sinclair, Libuse Ratcliffe, Kasia A Whysall, Rebecca I Haynes, Nicola M Wells, Malcolm J Jackson, Graeme L Close, Clare L Lawton, Michael BJ Beadsworth, Louise Dye, Anne MCARDLE:
Discriminatory cytokine profiles predict muscle function, fatigue and cognitive function in patients with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)
doi: https://doi.org/10.1101/2020.08.17.20164715
https://www.medrxiv.org/content/10.1101/2020.08.17.20164715v1
2) Steinbacher and Eckl: Impact of oxidative stress on exercising skeletal muscle. Biomolecules 2015 Apr 10;5(2):356-77.
doi: 10.3390/biom5020356.
https://pubmed.ncbi.nlm.nih.gov/25866921/
3) Velenosi, T.J., Thomson, B.K.A., Tonial, N.C. et al. Untargeted metabolomics reveals N, N, N-trimethyl-L-alanyl-L-proline betaine (TMAP) as a novel biomarker of kidney function. Sci Rep 9, 6831 (2019). https://www.nature.com/articles/s41598-019-42992-3
https://doi.org/10.1038/s41598-019-42992-3 PMID: 31048706 PMCID: PMC6497643