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søndag den 8. november 2026

Connecting the Dots - Part 2: Revisiting the PACS2 Master Switch and the MAM Interface in ME/CFS

In my previous post, we looked at how the new WASF3 brain study creates a fascinating bridge to historical ME/CFS transcriptomic data, showing a cellular energy crisis driven by the IER3 (IEX-1) mitochondrial brake. To understand why this communication line fails, we have to look closer at the physical structures where this breakdown occurs.
This brings me back to a blog post I wrote all the way back in October, 2018 ("PACS2 and ME"). Back then, we explored how the endoplasmic reticulum (ER) and mitochondria are tubular organelles with a characteristic “network structure” that facilitates the formation of inter-organellar connections. We discussed how mitochondria-associated ER membranes (MAMs), a subdomain of the ER that is tightly linked to and communicates with mitochondria, serve multiple physiological functions including lipid synthesis and exchange, calcium signaling, bioenergetics, and apoptosis.
In that 2018 post, I noted that abnormalities and dysfunction of MAMs are involved in various neurodegenerative disorders including Alzheimer’s, ALS, and Parkinson’s disease [1]. With the publication of the new WASF3 data, it is highly compelling to hypothesize that ME/CFS belongs on this exact same list of structural MAM pathologies.
The Dynamic Switch in the Middle of the Bridge
As we reviewed via Figure 1 from Liu and Zhu (2017) in that post, several protein complexes physically tether these organelles together [1]. One of the key players highlighted was phosphorin acidic cluster sorting protein 2 (PACS2), which modulates the crucial Fis1-Bap31 tether [1].
As a multifunctional protein, PACS2 is involved in membrane trafficking, MAM-localized Ca²⁺ signaling, apoptosis, lipid metabolism, and regulating the p53-p21-dependent cell cycle arrest [2]. Essentially, PACS2 functions as a metabolic switch that integrates traffic and interorganellar communication with nuclear gene expression in response to anabolic or catabolic cues [2].
When we connect my 2018 post with the new WASF3 brain study, the pieces of the puzzle begin to interlock beautifully:
  1. The WASF3 Connection: The new study reveals that WASF3 localizes precisely at these MAM interfaces. When cell stress causes an accumulation of WASF3, it throws a wrench into the delicate signaling across the bridge, triggering a p53-mediated stress cascade.
  2. The PACS2 Control Gate: Because PACS2 directly governs the p53-p21 stress response, lipid metabolism, and calcium flux at the MAM interface [2], any disruption to PACS2 will destabilize the entire bridge. This leaves the mitochondria completely exposed to downstream suppression, such as the IER3 energy brake running in high gear.
Epigenetic Scars and Viral Hijacking
Back in 2018, I highlighted a profound clue from de Vega et al. (2018): the gene PACS2 (TSS1500) is differentially methylated in immune cells from ME/CFS patient subtypes [3]. Because methylation acts as the cell’s internal volume control, an altered methylation profile means the cell cannot properly regulate this master metabolic switch at the MAM bridge.
What initially caused the dysregulation of the PACS2 signaling pathway? As previously noted, viruses can hijack this pathway, targeting the ER-mitochondria interface to manipulate cellular bioenergetics and evade immune responses. These findings support a compelling hypothesis: an acute viral infection—the classic trigger for ME/CFS—may permanently impair the PACS2 pathway by leaving a lasting epigenetic mark on the MAM interface.

References (from the original 2018 post):
  1. Liu and Zhu (2017). Endoplasmic reticulum-mitochondria tethering in neurodegenerative diseases. Transl Neurodegener. 6: 21. [PMC5567882].
  2. Thomas et al. (2017). Caught in the act - protein adaptation and the expanding roles of the PACS proteins in tissue homeostasis and disease. J Cell Sci. 130(11):1865-1876. [PMC5482974].
  3. de Vega et al. (2018). Integration of DNA methylation & health scores identifies subtypes in ME/CFS. Epigenomics, 10(5).

Connecting the Dots - Part 1: Does the New WASF3 Brain Study Hold the Key to Older ME/CFS Data?

The recent groundbreaking study on WASF3 in the brain, combined with previous research linking the same protein to muscle fatigue and exercise intolerance, marks a potential paradigm shift in how we view Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS). Finding the exact same molecular bottleneck in two completely distinct types of tissue—muscles and the brain—strongly suggests that we are not looking at an isolated organ issue, but rather a systemic cellular malfunction. This realization invites an exciting and necessary question: If this WASF3 stress-and-energy trap is truly a universal cellular feature of ME/CFS, can we find its biochemical fingerprints hidden in plain sight within older, independent datasets? By revisiting previous transcriptomic studies through this new molecular lens, we might just find that different research teams have been looking at different pieces of the exact same puzzle.

A Curious Look at the Immune System: The IER3 and MAM Connection
When we look at past ME/CFS research, one study particularly stands out. A 2019 transcriptomic analysis of circulating immune cells (PBMCs) by a New Zealand cohort led by Warren Sweetman mapped out altered gene expressions in patients. Interestingly, WASF3 itself does not typically show up as significantly altered in blood tests, as it is primarily expressed in muscle and brain tissue. However, when we analyze the top altered genes from that 2019 study, the entire cellular environment appears to reflect the exact downstream aftermath of the WASF3 pathway.
Most notably, the gene IER3 (also known as IEX-1) was found to be upregulated twofold in the patients' immune cells. In the new WASF3 brain model, elevated WASF3 triggers a stress cascade that activates IER3, which subsequently acts as a brake on mitochondrial energy production. Finding IER3 running in high gear inside the immune cells could hypothetically mean that the very same metabolic trap identified in the brain and muscles is also active in the immune system.
But the puzzle goes even deeper. The authors of the new brain study emphasized that we need to look closely at MAMs (Mitochondria-Associated Membranes). MAMs are the physical contact zones—the cellular interfaces—where the Endoplasmic Reticulum (ER) and the mitochondria communicate. The new study revealed that WASF3 localizes precisely at these MAM bridges, disrupting the delicate signaling required for normal cellular and neuronal function.
Remarkably, the rest of the 2019 gene table reads like a textbook response to a crisis unfolding at exactly this ER-mitochondria junction:
  • The ER-Stress Signal: We see significant upregulation of PPP1R15A (a classic marker of ER stress) and G3BP2 (involved in forming cellular "stress granules" during a crisis). This signals that the ER side of the MAM bridge is under intense pressure.
  • The Mitochondrial Counter-Response: At the same time, the immune cells show an increase in PMPCB (involved in processing mitochondrial proteins) and NAMPT (the master regulator of NAD+ salvage). This suggests the mitochondrial side of the bridge is desperately trying to adapt, rebuild its machinery, and keep making ATP (energy) despite the blockade.
While we cannot say anything with absolute certainty, it is highly compelling to hypothesize that ME/CFS immune cells are suffering from a localized crisis at the MAM interfaces, trapped in a state of chronic ER stress and mitochondrial suppression. Re-evaluating older data through the lens of these physical cellular bridges doesn't just validate past findings—it potentially weaves them together into a unified, systemic explanation for ME/CFS.

References:
Reference for PPP1R15A (GADD34) as an ER Stress Marker
  • What it is: PPP1R15A encodes the protein GADD34 (Growth Arrest and DNA Damage-Inducible Protein). It is activated as a direct consequence of the Integrated Stress Response (ISR) and the Unfolded Protein Response (UPR) during periods of cellular ER stress. Its primary function is to help the cell resume normal protein production (via dephosphorylation of eIF2α) once a stress crisis begins to clear.
  • Official Databases: You can link directly to the official NCBI Gene Result for PPP1R15A or the overview on Wikipedia: PPP1R15A.
Reference for G3BP2 as a Stress Granule Factor
  • What it is: G3BP2 (G3BP Stress Granule Assembly Factor 2) encodes an essential scaffolding protein. When a cell is exposed to overwhelming stress—such as ER stress or oxidative stress—this protein binds to untranslated mRNA. It triggers a physical process called liquid-liquid phase separation (LLPS) to form stress granules, which act as membrane-less emergency depots protecting the cell's genetic messages during a crisis.

Syed AM, Ma J, Wang PY, Son Y, Penjweini R, Mattu N, Knutson JR, Nakamori-Yamashita S, Springer DA, Ganguly A, Liu C, Hwang PM. Stress-inducible WASF3 regulates brain metabolism and cognitive function. Proc Natl Acad Sci U S A. 2026 Nov 3;123(44):e2617198123. doi: 10.1073/pnas.2617198123. Epub 2026 Oct 27. PMID: 42945241; PMCID: PMC13732061. https://pubmed.ncbi.nlm.nih.gov/42945241/
Wang PY, Ma J, Kim YC, Son AY, Syed AM, Liu C, Mori MP, Huffstutler RD, Stolinski JL, Talagala SL, Kang JG, Walitt BT, Nath A, Hwang PM. WASF3 disrupts mitochondrial respiration and may mediate exercise intolerance in myalgic encephalomyelitis/chronic fatigue syndrome. Proc Natl Acad Sci U S A. 2023 Aug 22;120(34):e2302738120. doi: 10.1073/pnas.2302738120. Epub 2023 Aug 14. PMID: 37579159; PMCID: PMC10450651. https://pubmed.ncbi.nlm.nih.gov/37579159/
Sweetman E, Ryan M, Edgar C, MacKay A, Vallings R, Tate W. Changes in the transcriptome of circulating immune cells of a New Zealand cohort with myalgic encephalomyelitis/chronic fatigue syndrome. Int J Immunopathol Pharmacol. 2019 Jan-Dec;33:2058738418820402. doi: 10.1177/2058738418820402. PMID: 30791746; PMCID: PMC6350121. https://pubmed.ncbi.nlm.nih.gov/30791746/



lørdag den 7. november 2026

Fra Pihurs ME/CFS gener til energikollaps: Samspillet mellem PRUNE1, ATPIF1, Complex V og polyphosphat

Disse fire komponenter danner et tætvævet system inde i mitokondriet, der styrer og beskytter cellens energiproduktion. Deres biologiske sammenhæng fungerer således:

  • Complex V (ATP-syntasen): Dette er selve mitokondriets centrale energimaskine (kraftværket). Dets primære opgave er at producere ATP (cellens energivaluta).
  • Polyphosphat (polyP): Dette er en kæde af fosfatmolekyler, som produceres og forbruges direkte inde i Complex V. PolyP fungerer som en lokal energibuffer og en stabilisator, der sikrer, at Complex V kører jævnt og effektivt.
  • PRUNE1: Dette er enzymet, der klipper i polyP-kæderne og styrer deres metabolisme. PRUNE1 sikrer, at der altid er den rette mængde polyP til rådighed, så Complex V kan fungere optimalt. Hvis PRUNE1 fejler, forstyrres polyP, og Complex V mister evnen til at lave effektiv energi (cellen tvinges over i glykolyse).
  • ATPIF1 (eller IF1): Dette er Complex V's indbyggede "nødbremse". Hvis cellen bliver ekstremt stresset eller mister sin energi (f.eks. på grund af polyP-mangel eller nedsat PRUNE1-aktivitet), vil Complex V begynde at løbe baglæns og spise cellens resterende energi i stedet for at producere den. ATPIF1 træder da til, låser Complex V og forhindrer dette energispild.
Den korte sammenhæng:
PRUNE1 styrer polyphosphat-balancen, som holder Complex V kørende i højeste gear. Hvis dette samarbejde svigter på grund af stress, falder energiproduktionen drastisk, og cellen bliver fuldstændig afhængig af nødbremsen, ATPIF1, for ikke at tømme sig selv totalt for energi.

PRUNE1 i ME/CFS og mulig forklaring på fatigue
PRUNE1 var faktisk et af de top-gener, der oprindeligt blev identificeret side om side med WASF3 i Pihurs genetiske meta-analyse af ME/CFS-patienter.
Samspillet mellem disse fire komponenter er yderst relevant for ME, fordi det rammer direkte ned i sygdommens biologiske hjerte:
  • Det bioenergetiske svigt: Når balancen mellem PRUNE1, polyphosphat, Complex V og ATPIF1 forstyrres, mister cellerne evnen til at producere energi via ilt. Cellen tvinges i stedet over i en ineffektiv sukkerforbrænding (glykolyse), hvilket forklarer den ekstreme udmattelse og hurtige mælkesyreophobning ved ME.
  • Forklaringen på PEM: Ved fysisk eller mental anstrengelse belastes dette i forvejen svækkede system maksimalt. Uden den rette polyphosphat-buffer og med en defekt Complex V (hvor nødbremsen ATPIF1 måske svigter), kollapser cellens energidepoter fuldstændigt. Det kan være forklaringen på det voldsomme tilbagefald efter aktivitet (PEM).
Kort sagt binder Pihurs oprindelige fund af netop WASF3 og PRUNE1 sig direkte til denne mitokondrielle akse, hvilket giver en konkret mekanistisk forklaring på både den fysiske udmattelse og den kognitive "hjernefog" ved ME.

Reference og mere viden
Pihur V, Datta S, Datta S. Meta analysis of Chronic Fatigue Syndrome through integration of clinical, gene expression, SNP and proteomic data. Bioinformation. 2011 Apr 22;6(3):120-4. doi: 10.6026/97320630006120. PMID: 21584188; PMCID: PMC3089886.